3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03120

Details:

PFam ID : PF03120

PFam Domain Description : NAD-dependent DNA ligase OB-fold domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 1179

Average sequence length: 81.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03120	E8MZJ2_ANATU_74_144	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03120	D6PG61_9VIRU_341_431	100

Sequence based PCA Plot of the family - PF03120 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=20
Motif2 Start=43 Length=8
Motif3 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay