3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03118

Details:

PFam ID : PF03118

PFam Domain Description : Bacterial RNA polymerase, alpha chain C terminal domain

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 829

Average sequence length: 65.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03118	E8MZJ2_ANATU_74_144	9.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03118	E8MZJ2_ANATU_74_144	100

Sequence based PCA Plot of the family - PF03118 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=55 Length=11
Motif3 Start=15 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay