3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03117

Details:

PFam ID : PF03117

PFam Domain Description : UL49 family

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 24

Average sequence length: 233.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03117	E2IL93_9BETA_103_237	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03117	Q8BEN6_9GAMA_245_503	100

Sequence based PCA Plot of the family - PF03117 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=127 Length=8
Motif3 Start=15 Length=8
Motif4 Start=107 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay