3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03116

Details:

PFam ID : PF03116

PFam Domain Description : NQR2, RnfD, RnfE family

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 732

Average sequence length: 314.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03116	A4NXT0_HAEIF_1_69	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03116	B0VFN9_CLOAI_7_368	100

Sequence based PCA Plot of the family - PF03116 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=127 Length=8
Motif3 Start=106 Length=11
Motif4 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay