3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03109

Details:

PFam ID : PF03109

PFam Domain Description : ABC1 family

Number of Sequence in 50% Dataset : 248

Number of Sequence in Full Dataset : 2139

Average sequence length: 115.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03109	Q7XRX6_ORYSJ_235_277	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03109	C6JQV3_FUSVA_88_235	100

Sequence based PCA Plot of the family - PF03109 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=18
Motif2 Start=18 Length=8
Motif3 Start=4 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay