3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03108

Details:

PFam ID : PF03108

PFam Domain Description : MuDR family transposase

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 411

Average sequence length: 62.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03108	Q7XRX6_ORYSJ_235_277	71.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03108	Q9LI63_ARATH_67_140	100

Sequence based PCA Plot of the family - PF03108 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay