3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03106

Details:

PFam ID : PF03106

PFam Domain Description : WRKY DNA -binding domain

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 651

Average sequence length: 56.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03106	Q18JH3_HALWD_743_825	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03106	D8UHQ9_VOLCA_1081_1124	95.3

Sequence based PCA Plot of the family - PF03106 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=17
Motif2 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay