3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03104

Details:

PFam ID : PF03104

PFam Domain Description : DNA polymerase family B, exonuclease domain

Number of Sequence in 50% Dataset : 377

Number of Sequence in Full Dataset : 1447

Average sequence length: 274.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03104	Q18JH3_HALWD_743_825	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03104	C5H9L5_9VIRU_10_171	99.8

Sequence based PCA Plot of the family - PF03104 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=140 Length=8
Motif2 Start=189 Length=8
Motif3 Start=332 Length=8
Motif4 Start=350 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay