3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03102

Details:

PFam ID : PF03102

PFam Domain Description : NeuB family

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 634

Average sequence length: 236.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03102	Q1K172_DESAC_23_291	90.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03102	Q1K172_DESAC_23_291	100

Sequence based PCA Plot of the family - PF03102 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=204 Length=8
Motif2 Start=116 Length=8
Motif3 Start=174 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay