3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03101

Details:

PFam ID : PF03101

PFam Domain Description : FAR1 DNA-binding domain

Number of Sequence in 50% Dataset : 134

Number of Sequence in Full Dataset : 399

Average sequence length: 86.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03101	D8PYP8_SCHCM_1060_1143	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03101	D6WW18_TRICA_10_120	99.7

Sequence based PCA Plot of the family - PF03101 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=47 Length=8
Motif4 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay