3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03100

Details:

PFam ID : PF03100

PFam Domain Description : CcmE

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 451

Average sequence length: 128.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03100	B6Y6U4_9RICK_1_55	84.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03100	E8N6B1_ANATU_16_171	99.7

Sequence based PCA Plot of the family - PF03100 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=10 Length=22
Motif3 Start=40 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay