3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03099

Details:

PFam ID : PF03099

PFam Domain Description : Biotin/lipoate A/B protein ligase family

Number of Sequence in 50% Dataset : 368

Number of Sequence in Full Dataset : 3485

Average sequence length: 121.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03099	Q0E3M1_ORYSJ_1_62	89.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03099	E3YN76_9LIST_3_59	87

Sequence based PCA Plot of the family - PF03099 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=39 Length=8
Motif3 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay