3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03098

Details:

PFam ID : PF03098

PFam Domain Description : Animal haem peroxidase

Number of Sequence in 50% Dataset : 330

Number of Sequence in Full Dataset : 956

Average sequence length: 368.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03098	B9RUD6_RICCO_7_66	76.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03098	B2VZV7_PYRTR_121_215	99.2

Sequence based PCA Plot of the family - PF03098 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=409 Length=8
Motif2 Start=12 Length=8
Motif3 Start=439 Length=8
Motif4 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay