3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03097

Details:

PFam ID : PF03097

PFam Domain Description : BRO1-like domain

Number of Sequence in 50% Dataset : 202

Number of Sequence in Full Dataset : 450

Average sequence length: 336.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03097	A2ESJ7_TRIVA_7_359	88.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03097	B3LCN0_PLAKH_11_412	99.5

Sequence based PCA Plot of the family - PF03097 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=42 Length=8
Motif2 Start=60 Length=8
Motif3 Start=2 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay