3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03096

Details:

PFam ID : PF03096

PFam Domain Description : Ndr family

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 137

Average sequence length: 226.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03096	Q0DK44_ORYSJ_27_126	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03096	A5AY36_VITVI_108_226	100

Sequence based PCA Plot of the family - PF03096 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=163 Length=8
Motif2 Start=102 Length=8
Motif3 Start=26 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay