3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03094

Details:

PFam ID : PF03094

PFam Domain Description : Mlo family

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 271

Average sequence length: 296.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03094	A5BRN0_VITVI_165_229	60.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03094	B8E2L9_DICTD_620_694	99.6

Sequence based PCA Plot of the family - PF03094 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=14
Motif2 Start=75 Length=8
Motif3 Start=361 Length=8
Motif4 Start=263 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay