3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03092

Details:

PFam ID : PF03092

PFam Domain Description : BT1 family

Number of Sequence in 50% Dataset : 115

Number of Sequence in Full Dataset : 344

Average sequence length: 354.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03092	E2NAN9_9BACE_21_247	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03092	A5BJK5_VITVI_60_126	100

Sequence based PCA Plot of the family - PF03092 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=469 Length=8
Motif2 Start=53 Length=8
Motif3 Start=427 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay