3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03091

Details:

PFam ID : PF03091

PFam Domain Description : CutA1 divalent ion tolerance protein

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 587

Average sequence length: 98.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03091	E6KW72_9PAST_1_70	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03091	C7R7D7_KANKD_10_116	100

Sequence based PCA Plot of the family - PF03091 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=14
Motif2 Start=3 Length=18
Motif3 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay