3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03087

Details:

PFam ID : PF03087

PFam Domain Description : Arabidopsis protein of unknown function

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 255

Average sequence length: 159.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03087	A2XWF4_ORYSI_84_346	59.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03087	D7MD30_ARALL_43_140	100

Sequence based PCA Plot of the family - PF03087 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay