3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03081

Details:

PFam ID : PF03081

PFam Domain Description : Exo70 exocyst complex subunit

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 352

Average sequence length: 316.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03081	Q2QQL3_ORYSJ_1_107	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03081	D3BCD4_POLPA_459_670	99.7

Sequence based PCA Plot of the family - PF03081 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=387 Length=8
Motif3 Start=302 Length=8
Motif4 Start=413 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay