3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03080

Details:

PFam ID : PF03080

PFam Domain Description : Domain of unknown function (DUF239)

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 282

Average sequence length: 178.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03080	Q2QQL3_ORYSJ_1_107	82.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03080	B9GAB7_ORYSJ_13_167	99.6

Sequence based PCA Plot of the family - PF03080 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=76 Length=8
Motif2 Start=137 Length=8
Motif3 Start=239 Length=8
Motif4 Start=174 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay