3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03073

Details:

PFam ID : PF03073

PFam Domain Description : TspO/MBR family

Number of Sequence in 50% Dataset : 138

Number of Sequence in Full Dataset : 574

Average sequence length: 141.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03073	Y041_MYCPN_1_142	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03073	A8QFA4_BRUMA_41_142	100

Sequence based PCA Plot of the family - PF03073 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay