3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03071

Details:

PFam ID : PF03071

PFam Domain Description : GNT-I family

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 164

Average sequence length: 300.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03071	B8AFJ1_ORYSI_169_213	79.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03071	D2UZX5_NAEGR_11_461	99.3

Sequence based PCA Plot of the family - PF03071 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=139 Length=8
Motif2 Start=184 Length=8
Motif3 Start=21 Length=8
Motif4 Start=98 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay