3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03070

Details:

PFam ID : PF03070

PFam Domain Description : TENA/THI-4/PQQC family

Number of Sequence in 50% Dataset : 228

Number of Sequence in Full Dataset : 919

Average sequence length: 197.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03070	Q1JPH9_BOVIN_279_404	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03070	Q08Q49_STIAD_26_180	100

Sequence based PCA Plot of the family - PF03070 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=14
Motif3 Start=33 Length=8
Motif4 Start=246 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay