3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03069

Details:

PFam ID : PF03069

PFam Domain Description : FmdE, Molybdenum formylmethanofuran dehydrogenase operon

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 857

Average sequence length: 190.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03069	Q1JPH9_BOVIN_279_404	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03069	D8TRD5_VOLCA_396_498	100

Sequence based PCA Plot of the family - PF03069 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay