3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03065

Details:

PFam ID : PF03065

PFam Domain Description : Glycosyl hydrolase family 57

Number of Sequence in 50% Dataset : 134

Number of Sequence in Full Dataset : 642

Average sequence length: 346.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03065	U79_HHV6U_6_233	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03065	D6TFW6_9CHLR_10_370	100

Sequence based PCA Plot of the family - PF03065 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=230 Length=8
Motif2 Start=510 Length=8
Motif3 Start=263 Length=11
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay