3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03060

Details:

PFam ID : PF03060

PFam Domain Description : Nitronate monooxygenase

Number of Sequence in 50% Dataset : 254

Number of Sequence in Full Dataset : 2281

Average sequence length: 301.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03060	Q1XF15_SORMA_1_108	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03060	D7W7M1_9FLAO_84_221	100

Sequence based PCA Plot of the family - PF03060 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=128 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay