3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03054

Details:

PFam ID : PF03054

PFam Domain Description : tRNA methyl transferase

Number of Sequence in 50% Dataset : 177

Number of Sequence in Full Dataset : 1363

Average sequence length: 317.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03054	A6BB58_VIBPA_1_170	80.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03054	D5GAK9_TUBMM_55_505	100

Sequence based PCA Plot of the family - PF03054 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=60 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay