3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03050

Details:

PFam ID : PF03050

PFam Domain Description : Transposase IS66 family

Number of Sequence in 50% Dataset : 354

Number of Sequence in Full Dataset : 1155

Average sequence length: 182.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03050	O41937_MHV68_14_267	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03050	C9NPK7_9VIBR_1_60	99.2

Sequence based PCA Plot of the family - PF03050 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=5 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay