3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03049

Details:

PFam ID : PF03049

PFam Domain Description : UL79 family

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 27

Average sequence length: 231.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03049	O41937_MHV68_14_267	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03049	O41937_MHV68_14_267	100

Sequence based PCA Plot of the family - PF03049 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=58 Length=8
Motif2 Start=146 Length=8
Motif3 Start=171 Length=11
Motif4 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay