3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03043

Details:

PFam ID : PF03043

PFam Domain Description : Herpesvirus UL87 family

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 29

Average sequence length: 461.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03043	Q69330_SHV2_1_85	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03043	Q993J4_9GAMA_171_747	100

Sequence based PCA Plot of the family - PF03043 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay