3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03042

Details:

PFam ID : PF03042

PFam Domain Description : Birnavirus VP5 protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 10

Average sequence length: 107.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03042	Q06075_IBDV_11_145	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03042	Q06075_IBDV_11_145	100

Sequence based PCA Plot of the family - PF03042 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay