3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03041

Details:

PFam ID : PF03041

PFam Domain Description : lef-2

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 47

Average sequence length: 163.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03041	Q0IKY2_NPVLS_40_218	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03041	Q0IKY2_NPVLS_40_218	100

Sequence based PCA Plot of the family - PF03041 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=47 Length=8
Motif2 Start=138 Length=8
Motif3 Start=33 Length=8
Motif4 Start=166 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay