3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03040

Details:

PFam ID : PF03040

PFam Domain Description : CemA family

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 228

Average sequence length: 205.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03040	B9VLA2_9CHLO_55_196	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03040	C7BEX2_PARKE_41_197	99.1

Sequence based PCA Plot of the family - PF03040 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay