3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03035

Details:

PFam ID : PF03035

PFam Domain Description : Calicivirus putative RNA polymerase/capsid protein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 77

Average sequence length: 204.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03035	A7YK53_9CALI_1_204	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03035	Q8B4Z4_9CALI_67_279	100

Sequence based PCA Plot of the family - PF03035 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=99 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay