3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03033

Details:

PFam ID : PF03033

PFam Domain Description : Glycosyltransferase family 28 N-terminal domain

Number of Sequence in 50% Dataset : 383

Number of Sequence in Full Dataset : 1968

Average sequence length: 137.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03033	A8MDC5_CALMQ_13_752	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03033	Q8KNC3_MICEC_6_285	98.9

Sequence based PCA Plot of the family - PF03033 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=104 Length=8
Motif2 Start=122 Length=8
Motif3 Start=142 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay