3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03032

Details:

PFam ID : PF03032

PFam Domain Description : Brevenin/esculentin/gaegurin/rugosin family

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 460

Average sequence length: 44.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03032	A8MDC5_CALMQ_13_752	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03032	Q719L6_9NEOB_2_32	97.1

Sequence based PCA Plot of the family - PF03032 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay