3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03031

Details:

PFam ID : PF03031

PFam Domain Description : NLI interacting factor-like phosphatase

Number of Sequence in 50% Dataset : 272

Number of Sequence in Full Dataset : 1233

Average sequence length: 158.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03031	A8MDC5_CALMQ_13_752	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03031	F2EJP3_HORVD_313_369	97.9

Sequence based PCA Plot of the family - PF03031 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=172 Length=8
Motif2 Start=185 Length=11
Motif3 Start=103 Length=8
Motif4 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay