3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03030

Details:

PFam ID : PF03030

PFam Domain Description : Inorganic H+ pyrophosphatase

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 611

Average sequence length: 589.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03030	A8MDC5_CALMQ_13_752	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03030	Q4N2X6_THEPA_55_449	100

Sequence based PCA Plot of the family - PF03030 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=361 Length=8
Motif2 Start=375 Length=14
Motif3 Start=420 Length=11
Motif4 Start=437 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay