3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03029

Details:

PFam ID : PF03029

PFam Domain Description : Conserved hypothetical ATP binding protein

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 823

Average sequence length: 204.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03029	B5QF84_CAMJE_1_153	82.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03029	C1G4B1_PARBD_1_115	61

Sequence based PCA Plot of the family - PF03029 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=21
Motif2 Start=81 Length=11
Motif3 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay