3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03028

Details:

PFam ID : PF03028

PFam Domain Description : Dynein heavy chain and region D6 of dynein motor

Number of Sequence in 50% Dataset : 376

Number of Sequence in Full Dataset : 986

Average sequence length: 519.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03028	B0W0Y7_CULQU_43_115	96

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03028	DYHC1_PLAF7_4693_4869	99.8

Sequence based PCA Plot of the family - PF03028 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=759 Length=8
Motif2 Start=2 Length=11
Motif3 Start=851 Length=8
Motif4 Start=886 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay