3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03026

Details:

PFam ID : PF03026

PFam Domain Description : Influenza C virus M1 protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 117.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03026	A0C2I4_PARTE_30_191	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03026	MAT_INCTA_1_235	100

Sequence based PCA Plot of the family - PF03026 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay