3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03022

Details:

PFam ID : PF03022

PFam Domain Description : Major royal jelly protein

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 403

Average sequence length: 246.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03022	E9IME0_SOLIN_114_194	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03022	D2V259_NAEGR_157_462	100

Sequence based PCA Plot of the family - PF03022 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=85 Length=8
Motif3 Start=98 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay