3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03020

Details:

PFam ID : PF03020

PFam Domain Description : LEM domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 110

Average sequence length: 41.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03020	A9JS14_XENLA_1_31	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03020	F1MCA8_BOVIN_133_155	95.4

Sequence based PCA Plot of the family - PF03020 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=11 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay