3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03018

Details:

PFam ID : PF03018

PFam Domain Description : Dirigent-like protein

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 396

Average sequence length: 134.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03018	B2KZI7_PICAB_1_62	73.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03018	Q94LE9_ORYSJ_1_82	99.7

Sequence based PCA Plot of the family - PF03018 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=40 Length=8
Motif4 Start=108 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay