3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03017

Details:

PFam ID : PF03017

PFam Domain Description : TNP1/EN/SPM transposase

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 76

Average sequence length: 65.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03017	Q9C6Z6_ARATH_119_182	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03017	C5YDC6_SORBI_217_292	100

Sequence based PCA Plot of the family - PF03017 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay