3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03016

Details:

PFam ID : PF03016

PFam Domain Description : Exostosin family

Number of Sequence in 50% Dataset : 268

Number of Sequence in Full Dataset : 728

Average sequence length: 258.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03016	A3RD71_HEV_1_60	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03016	E9CCS5_9EUKA_102_286	99.3

Sequence based PCA Plot of the family - PF03016 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=120 Length=8
Motif2 Start=105 Length=8
Motif3 Start=21 Length=8
Motif4 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay