3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03009

Details:

PFam ID : PF03009

PFam Domain Description : Glycerophosphoryl diester phosphodiesterase family

Number of Sequence in 50% Dataset : 996

Number of Sequence in Full Dataset : 3219

Average sequence length: 229.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03009	A6DGM5_9BACT_1_80	90.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03009	A9WUH2_RENSM_6_180	100

Sequence based PCA Plot of the family - PF03009 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=187 Length=8
Motif2 Start=43 Length=11
Motif3 Start=383 Length=11
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay