3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03008

Details:

PFam ID : PF03008

PFam Domain Description : Archaea bacterial proteins of unknown function

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 335

Average sequence length: 100.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03008	D0N5C4_PHYIT_80_481	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03008	D3ADR8_9CLOT_316_437	100

Sequence based PCA Plot of the family - PF03008 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=26 Length=8
Motif3 Start=45 Length=8
Motif4 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay