3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03007

Details:

PFam ID : PF03007

PFam Domain Description : Wax ester synthase-like Acyl-CoA acyltransferase domain

Number of Sequence in 50% Dataset : 206

Number of Sequence in Full Dataset : 514

Average sequence length: 237.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03007	D0N5C4_PHYIT_80_481	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03007	D3M895_9ACTO_6_333	100

Sequence based PCA Plot of the family - PF03007 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=245 Length=8
Motif2 Start=103 Length=8
Motif3 Start=260 Length=8
Motif4 Start=129 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay